NOAA Fisheries Integrated Toolbox
Welcome to the FIT!
- Browse publicly accessible software tools for NOAA Fisheries scientific work using the search bar below.
- Interested in using compiled FIT R packages? Check out the FIT R Universe.
2BOX
Dual Zone Virtual Population Analysis
Toolbox drawer(s):
- Fish and Fisheries
Keywords:
- Virtual Population Analysis
- Stock Assessment Model
AcousticThresholds
Technical Guidance for Assessing the Effects of Anthropogenic Sound on Marine Mammal Hearing
Toolbox drawer(s):
- Protected Species
Keywords:
- Web App
- Marine Mammals
ADMB
AD Model Builder
Toolbox drawer(s):
- General Modeling Tools
- Fish and Fisheries
Keywords:
- Bayesian Modeling
- Maximum Likelihood Estimation
- Model Builder
- Gradient Solver
adnuts
AD no U-turn sampling
Toolbox drawer(s):
- General Modeling Tools
- Fish and Fisheries
Keywords:
- R Package
- Bayesian Modeling
AgeingError
Ageing Error
Toolbox drawer(s):
- Fish and Fisheries
Keywords:
- Data Exploration
- Fisheries
- R Package
- TMB
AGEPRO
Age Structured Projection Model
Toolbox drawer(s):
- Fish and Fisheries
Keywords:
- Stock Assessment Projections
- Age Structured Model
- Guided User Interface
agTrend
A Bayesian approach for estimating trends of aggregated abundance
Toolbox drawer(s):
- Protected Species
- General Modeling Tools
Keywords:
- R Package
AIM
An Index Method
Toolbox drawer(s):
- Fish and Fisheries
Keywords:
- Stock Assessment Model
- Data Limited Method
ASAP
Age Structured Assessment Program
Toolbox drawer(s):
- Fish and Fisheries
Keywords:
- Stock Assessment Model
- Age Structured Model
- Guided User Interface
ASPIC
A Stock Production Model Incorporating Covariates
Toolbox drawer(s):
- Fish and Fisheries
Keywords:
- Stock Assessment Model
- Surplus Production Model
- Guided User Interface
ATL
Analytics Template Library
Toolbox drawer(s):
- General Modeling Tools
Keywords:
- Maximum Likelihood Estimation
- Model Builder
- Gradient Solver
Atlantis
Atlantis
Toolbox drawer(s):
- Ecosystem
- Fish and Fisheries
Keywords:
- Socioeconomics
- Ecosystem
bayesdfa
Bayesian Dynamic Factor Analysis with Stan
Toolbox drawer(s):
- General Modeling Tools
Keywords:
- Bayesian Modeling
- Time Series
- R Package
bycatch
bycatch
Toolbox drawer(s):
- Protected Species
- Fish and Fisheries
Keywords:
- R Package
- Bayesian Modeling
CASAL2
C++ Algorithmic Stock Assessment Laboratory version 2
Toolbox drawer(s):
- Fish and Fisheries
Keywords:
- C++
- Stock Assessment Model
- Age Structured Model
CSA
Collie-Sissenwine Analysis
Toolbox drawer(s):
- Fish and Fisheries
Keywords:
- Stock Assessment Model
- Data Limited Method
- Guided User Interface
DCAC
Depletion-Corrected Average Catch
Toolbox drawer(s):
- Fish and Fisheries
Keywords:
- Stock Assessment Model
- Data Limited Method
DisMAP
The Distribution Mapping and Analysis Portal
Toolbox drawer(s):
- Fish and Fisheries
Keywords:
- Web App
- Species Distribution Model
Donut_Tool
Prey Preference and Diet Composition Tool
Toolbox drawer(s):
- Ecosystem
Keywords:
- Guided User Interface
EcoCast
EcoCast
Toolbox drawer(s):
- Ecosystems
- Fish and Fisheries
- Protected Species
Keywords:
- Bycatch
- Decision Support Tool
- Marine Mammals
- North Pacific
- Web App
eSDM
Ensemble tool for predictions from Species Distribution Models
Toolbox drawer(s):
- Protected Species
Keywords:
- Web App
- Shiny
- Ensemble Modeling
- R Package
FIMS
The Fisheries Integrated Modeling System
Toolbox drawer(s):
- Fish and Fisheries
Keywords:
- Age Structured Model
- C++
- R Package
- Stock Assessment Model
- TMB
FishEconProdOutput
Price Method Fisheries Economics Total Factor Productivity Outputs for the U.S. Fisheries
Toolbox drawer(s):
- Human Dimensions
Keywords:
- Economics
- R Package
FishLife
FishLife
Toolbox drawer(s):
- General Modeling Tools
- Fish and Fisheries
Keywords:
- R Package
- Fish and Fisheries
- Fish Biology
- Web App
- Shiny
FishPath
FishPath
Toolbox drawer(s):
- Fish and Fisheries
- Human Dimensions
Keywords:
- Data Limited Method
- Decision Support Tool
- Fisheries
- Web App
FishSET
Spatial Economics Toolbox for Fisheries
Toolbox drawer(s):
- Human Dimensions
Keywords:
- Data Visualization
- Economics
- R Package
- Shiny
- Spatial Model
GADGET
Globally applicable Area-Disaggregated General Ecosystem Toolbox
Toolbox drawer(s):
- Ecosystem
- Fish and Fisheries
Keywords:
- Ecosystem
- Fish and Fisheries
- Multispecies Model
glmmfields
Spatial GLMMs in R with Stan
Toolbox drawer(s):
- General Modeling Tools
Keywords:
- Bayesian Modeling
- R Package
GMACS
General Model for Assessing Crustacean Stocks
Toolbox drawer(s):
- Fish and Fisheries
Keywords:
- Size Structured Model
- Stock Assessment Model
KALMAN
Kalman Filter
Toolbox drawer(s):
- General Modeling Tools
Keywords:
- Time Series
- Guided User Interface
LHSampling
Life History Sampling
Toolbox drawer(s):
- Fish and Fisheries
Keywords:
- Individual Based Model
- Sampling Decision Tool
- Spatial Model
- R Package
MARSS
Multivariate Autoregressive State-Space Modeling with R
Toolbox drawer(s):
- General Modeling Tools
- Protected Species
Keywords:
- Time Series
- R Package
MCOMP
Model Compare Utility
Toolbox drawer(s):
- Fish and Fisheries
Keywords:
- Model Comparision
- Output Visualization
- Guided User Interface
MIZER
Multi-species size spectrum modelling in R
Toolbox drawer(s):
- Ecosystem
Keywords:
- R Package
- Multispecies Model
- Fish and Fisheries
- Size Spectra Model
MSCAA
Multi-Species Statistical Catch-At-Age
Toolbox drawer(s):
- Ecosystem
- Fish and Fisheries
Keywords:
- Multispecies Model
- Fish and Fisheries
- Guided User Interface
- Output Visualization
MSE
Management Strategy Evaluation
Toolbox drawer(s):
- Fish and Fisheries
Keywords:
- Management Strategy Evaluation
- Guided User Interface
- Simulation
- Risk Assessment Tool
MSSPM
Multi-Species Surplus Production Model
Toolbox drawer(s):
- Ecosystem
- Fish and Fisheries
Keywords:
- Surplus Production Model
- Multispecies Model
- Guided User Interface
MSVPA_X2
Multi-Species Virtual Population Analysis eXtended 2
Toolbox drawer(s):
- Ecosystem
- Fish and Fisheries
Keywords:
- Multispecies Model
- Virtual Population Analysis
- Guided User Interface
nmfSharedUtilities
nmfSharedUtilities
Toolbox drawer(s):
- Ecosystem
- Fish and Fisheries
Keywords:
- User Utilities
- Guided User Interface
- Multispecies Model
nmfspalette
nmfspalette
Toolbox drawer(s):
- Utility Tools
Keywords:
- User Utilities
- Developer Utilities
- NOAA Branding
- R Package
NWCTrends
Standardized trends metrics for listed PNW salmonids
Toolbox drawer(s):
- Protected Species
- Fish and Fisheries
Keywords:
- Salmon
- Time Series
- R Package
- Standardized Reporting
ObsCovgTools
Observer Coverage Simulator Tool
Toolbox drawer(s):
- Protected Species
- Fish and Fisheries
Keywords:
- Bycatch
- R Package
- Shiny
- Guided User Interface
OSMOSE
Object-oriented Simulator of Marine Ecosystems
Toolbox drawer(s):
- Ecosystem
- Fish and Fisheries
Keywords:
- Simulation
- Individual Based Model
- Spatial Model
phenomix
phenomix
Toolbox drawer(s):
- Protected Species
- Fish and Fisheries
Keywords:
- Salmon
- Time Series
- Fish and Fisheries
phylosem
R package for phylogenetic structural equation models
Toolbox drawer(s):
- Fish and Fisheries
- General Modeling Tools
Keywords:
- Natural Mortality Model
- R Package
- TMB
POPSIM
Population Simulator
Toolbox drawer(s):
- Fish and Fisheries
Keywords:
- Simulation
- Guided User Interface
POPSIM-A
Age Population Simulator
Toolbox drawer(s):
- Fish and Fisheries
Keywords:
- Simulation
- Guided User Interface
POPSIM-L
Length Population Simulator
Toolbox drawer(s):
- Fish and Fisheries
Keywords:
- Simulation
- Guided User Interface
PSA
Productivity and Susceptibility Analysis (Shiny Version)
Toolbox drawer(s):
- Fish and Fisheries
- Human Dimensions
Keywords:
- Risk Assessment Tool
- Shiny
- Web App
- Decision Support Tool
- Data Limited Method
PSA_nft
Productivity and Susceptibility Analysis (National Fisheries Toolbox)
Toolbox drawer(s):
- Fish and Fisheries
Keywords:
- Risk Assessment Tool
- Fish and Fisheries
- Simulation
pycax
pycax: Python client for the Coordinated Assessment Program CAX database REST API
Toolbox drawer(s):
- Fish and Fisheries
- Protected Species
Keywords:
- Salmon
- API Client
- Python Package
- West Coast
r4MAS
R interface to Metapopulation Assessment System
Toolbox drawer(s):
- Fish and Fisheries
Keywords:
- Stock Assessment Model
- R Package
r4ss
r4ss
Toolbox drawer(s):
- Fish and Fisheries
Keywords:
- Data Visualization
- Fisheries
- Output Visualization
- R Package
rCAX
rCAX: R client for the Coordinated Assessment HLI API
Toolbox drawer(s):
- Protected Species
- Fish and Fisheries
Keywords:
- R Package
- Salmon
- API Client
- West Coast
REIA
Regional Economic Impact Analysis for North Pacific Fisheries
Toolbox drawer(s):
- Human Dimensions
- Fish and Fisheries
Keywords:
- Economics
- North Pacific
- Fish and Fisheries
REMORA
REsource Management Option Review and Analysis Tool
Toolbox drawer(s):
- Ecosystem
Keywords:
- Guided User Interface
- Decision Support Tool
- Projection Modeling
RIVARD
Rivard Calculator
Toolbox drawer(s):
- Fish and Fisheries
Keywords:
- Calculator
- User Utilities
- Guided User Interface
RPATH
R implementation of the Ecopath with Ecosim
Toolbox drawer(s):
- Ecosystem
- Fish and Fisheries
Keywords:
- R Package
- Multispecies Model
- Ecosystem
- Fish and Fisheries
- Management Strategy Evaluation
SCALE
Statistical Catch at Length Model
Toolbox drawer(s):
- Fish and Fisheries
Keywords:
- Stock Assessment Model
- Length Structured Model
- ADMB
- Guided User Interface
SEINE
Survival Estimation in Non-Equilibrium situations
Toolbox drawer(s):
- Fish and Fisheries
Keywords:
- Data Limited Method
- Stock Assessment Model
- Guided User Interface
- Natural Mortality Model
SIFC
Social Indicators for Fishing Communities
Toolbox drawer(s):
- Human Dimensions
Keywords:
- Web App
- Data Exploration
- Socioeconomics
SRFIT
Stock Recruitment Fitting Model
Toolbox drawer(s):
- Fish and Fisheries
Keywords:
- Reference Points Model
- ADMB
- Bayesian Modeling
- Guided User Interface
SS-DL_Tool
Stock Synthesis - Data Limited Tool
Toolbox drawer(s):
- Fish and Fisheries
Keywords:
- Data Limited Method
- Shiny
- Web App
- Guided User Interface
- Stock Assessment Model
SS3
Stock Synthesis
Toolbox drawer(s):
- Fish and Fisheries
Keywords:
- Stock Assessment Model
- Age Structured Model
- Length Structured Model
- ADMB
- Guided User Interface
SSMSE
Management Strategy Evaluation for SS3
Toolbox drawer(s):
- Fish and Fisheries
Keywords:
- R Package
- Management Strategy Evaluation
- ADMB
- Risk Assessment Tool
- Decision Support Tool
STATCAM
Statistical Catch at Age Model
Toolbox drawer(s):
- Fish and Fisheries
Keywords:
- Age Structured Model
- ADMB
- Guided User Interface
StockSMART
Stock Status, Management, Assessments & Resource Trends
Toolbox drawer(s):
- Fish and Fisheries
Keywords:
- Web App
- Data Visualization
TPW
Top Predator Watch
Toolbox drawer(s):
- Ecosystems
- Protected Species
Keywords:
- Bycatch
- Fisheries
- Marine Mammals
- North Pacific
- Species Distribution Model
VAST
Vector Autoregressive Spatio-Temporal Model
Toolbox drawer(s):
- General Modeling Tools
- Fish and Fisheries
Keywords:
- Time Series
- Spatial Model
- TMB
- Species Distribution Model
VES-V
Virtual Ecosystem Scenario Viewer
Toolbox drawer(s):
- Ecosystem
- Fish and Fisheries
Keywords:
- Guided User Interface
- Visualization
- Simulation
- Fish and Fisheries
VPA
Virtual Population Analysis
Toolbox drawer(s):
- Fish and Fisheries
Keywords:
- Virtual Population Analysis
- Stock Assessment Model
- Guided User Interface
VRAP
Viability and Risk Assessment Procedure
Toolbox drawer(s):
- Protected Species
- Fish and Fisheries
Keywords:
- Risk Assessment Tool
- Simulation
- Fish and Fisheries
- Shiny
- Web App
VRD
Visual Report Designer
Toolbox drawer(s):
- Fish and Fisheries
Keywords:
- Guided User Interface
- User Utilities
WHAM
Woods Hole Assessment Model
Toolbox drawer(s):
- Fish and Fisheries
Keywords:
- Stock Assessment Model
- Age Structured Model
- TMB
- R Package
- Management Strategy Evaluation
WW2.0
WhaleWatch 2.0
Toolbox drawer(s):
- Ecosystems
- Protected Species
Keywords:
- Decision Support Tool
- Marine Mammals
- North Pacific
- Shiny
- Species Distribution Model
YPR
Yield Per Recruit
Toolbox drawer(s):
- Fish and Fisheries
Keywords:
- Reference Points Model
- Stock Assessment Tool
- Visualization
YPRLEN
Length Based Yield Per Recruit
Toolbox drawer(s):
- Fish and Fisheries
Keywords:
- Reference Points Model
- Stock Assessment Tool
- Visualization
- Length Structured Model