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NOAA Fisheries Integrated Toolbox

Welcome to the FIT! Browse open source software tools for data end-users.

2BOX
Dual Zone Virtual Population Analysis

Toolbox drawer(s):

  • Fish and Fisheries

Keywords:

  • Virtual Population Analysis
  • Stock Assessment Model
AcousticThresholds
Technical Guidance for Assessing the Effects of Anthropogenic Sound on Marine Mammal Hearing

Toolbox drawer(s):

  • Protected Species

Keywords:

  • Web App
  • Marine Mammals
ADMB
AD Model Builder

Toolbox drawer(s):

  • General Modeling Tools
  • Fish and Fisheries

Keywords:

  • Bayesian Modeling
  • Maximum Likelihood Estimation
  • Model Builder
  • Gradient Solver
adnuts
AD no U-turn sampling

Toolbox drawer(s):

  • General Modeling Tools
  • Fish and Fisheries

Keywords:

  • R Package
  • Bayesian Modeling
AGEPRO
Age Structured Projection Model

Toolbox drawer(s):

  • Fish and Fisheries

Keywords:

  • Stock Assessment Projections
  • Age Structured Model
  • Guided User Interface
agTrend
A Bayesian approach for estimating trends of aggregated abundance

Toolbox drawer(s):

  • Protected Species
  • General Modeling Tools

Keywords:

  • R Package
AIM
An Index Method

Toolbox drawer(s):

  • Fish and Fisheries

Keywords:

  • Stock Assessment Model
  • Data Limited Method
ASAP
Age Structured Assessment Program

Toolbox drawer(s):

  • Fish and Fisheries

Keywords:

  • Stock Assessment Model
  • Age Structured Model
  • Guided User Interface
ASPIC
A Stock Production Model Incorporating Covariates

Toolbox drawer(s):

  • Fish and Fisheries

Keywords:

  • Stock Assessment Model
  • Surplus Production Model
  • Guided User Interface
ATL
Analytics Template Library

Toolbox drawer(s):

  • General Modeling Tools

Keywords:

  • Maximum Likelihood Estimation
  • Model Builder
  • Gradient Solver
Atlantis
Atlantis

Toolbox drawer(s):

  • Ecosystem
  • Fish and Fisheries

Keywords:

  • Socioeconomics
  • Ecosystem
atsar
Applied time series analysis in R with Stan

Toolbox drawer(s):

  • General Modeling Tools

Keywords:

  • Bayesian Modeling
  • Time Series
  • Teaching Tool
  • R Package
bayesdfa
Bayesian Dynamic Factor Analysis with Stan

Toolbox drawer(s):

  • General Modeling Tools

Keywords:

  • Bayesian Modeling
  • Time Series
  • R Package
bycatch
bycatch

Toolbox drawer(s):

  • Protected Species
  • Fish and Fisheries

Keywords:

  • R Package
  • Bayesian Modeling
CASAL2
C++ Algorithmic Stock Assessment Laboratory version 2

Toolbox drawer(s):

  • Fish and Fisheries

Keywords:

  • C++
  • Stock Assessment Model
  • Age Structured Model
CSA
Collie-Sissenwine Analysis

Toolbox drawer(s):

  • Fish and Fisheries

Keywords:

  • Stock Assessment Model
  • Data Limited Method
  • Guided User Interface
DCAC
Depletion-Corrected Average Catch

Toolbox drawer(s):

  • Fish and Fisheries

Keywords:

  • Stock Assessment Model
  • Data Limited Method
DisMAP
The Distribution Mapping and Analysis Portal

Toolbox drawer(s):

  • Fish and Fisheries

Keywords:

  • Web App
  • Species Distribution Model
Donut_Tool
Prey Preference and Diet Composition Tool

Toolbox drawer(s):

  • Ecosystem

Keywords:

  • Guided User Interface
EcoCast
EcoCast

Toolbox drawer(s):

  • Ecosystems
  • Fish and Fisheries
  • Protected Species

Keywords:

  • Bycatch
  • Decision Support Tool
  • Marine Mammals
  • North Pacific
  • Web App
eSDM
Ensemble tool for predictions from Species Distribution Models

Toolbox drawer(s):

  • Protected Species

Keywords:

  • Web App
  • Shiny
  • Ensemble Modeling
  • R Package
EwE
Ecopath with Ecosim

Toolbox drawer(s):

  • Ecosystem

Keywords:

  • Ecosystem
FishEconProdOutput
Price Method Fisheries Economics Total Factor Productivity Outputs for the U.S. Fisheries

Toolbox drawer(s):

  • Human Dimensions

Keywords:

  • Economics
  • R Package
fisheye
Fisheries Economic Explorer

Toolbox drawer(s):

  • Human Dimensions

Keywords:

  • Web App
  • Economics
FishLife
FishLife

Toolbox drawer(s):

  • General Modeling Tools
  • Fish and Fisheries

Keywords:

  • R Package
  • Fish and Fisheries
  • Fish Biology
  • Web App
  • Shiny
FishPath
FishPath

Toolbox drawer(s):

  • Fish and Fisheries
  • Human Dimensions

Keywords:

  • Data Limited Method
  • Decision Support Tool
  • Fisheries
  • Web App
GADGET
Globally applicable Area-Disaggregated General Ecosystem Toolbox

Toolbox drawer(s):

  • Ecosystem
  • Fish and Fisheries

Keywords:

  • Ecosystem
  • Fish and Fisheries
  • Multispecies Model
ghactions4r
ghactions4r

Toolbox drawer(s):

  • Utility Tools

Keywords:

  • R Package
  • Developer Utilities
ghBackup
ghBackup

Toolbox drawer(s):

  • Utility Tools

Keywords:

  • R Package
  • Developer Utilities
glmmfields
Spatial GLMMs in R with Stan

Toolbox drawer(s):

  • General Modeling Tools

Keywords:

  • Bayesian Modeling
  • R Package
GMACS
General Model for Assessing Crustacean Stocks

Toolbox drawer(s):

  • Fish and Fisheries

Keywords:

  • Size Structured Model
  • Stock Assessment Model
IRATE
Instantaneous Rates

Toolbox drawer(s):

  • Fish and Fisheries

Keywords:

  • Tag Data Model
KALMAN
Kalman Filter

Toolbox drawer(s):

  • General Modeling Tools

Keywords:

  • Time Series
  • Guided User Interface
LHSampling
Life History Sampling

Toolbox drawer(s):

  • Fish and Fisheries

Keywords:

  • Individual Based Model
  • Sampling Decision Tool
  • Spatial Model
  • R Package
MARSS
Multivariate Autoregressive State-Space Modeling with R

Toolbox drawer(s):

  • General Modeling Tools
  • Protected Species

Keywords:

  • Time Series
  • R Package
MCOMP
Model Compare Utility

Toolbox drawer(s):

  • Fish and Fisheries

Keywords:

  • Model Comparision
  • Output Visualization
  • Guided User Interface
MIZER
Multi-species size spectrum modelling in R

Toolbox drawer(s):

  • Ecosystem

Keywords:

  • R Package
  • Multispecies Model
  • Fish and Fisheries
  • Size Spectra Model
MSCAA
Multi-Species Statistical Catch-At-Age

Toolbox drawer(s):

  • Ecosystem
  • Fish and Fisheries

Keywords:

  • Multispecies Model
  • Fish and Fisheries
  • Guided User Interface
  • Output Visualization
MSE
Management Strategy Evaluation

Toolbox drawer(s):

  • Fish and Fisheries

Keywords:

  • Management Strategy Evaluation
  • Guided User Interface
  • Simulation
  • Risk Assessment Tool
MSSPM
Multi-Species Surplus Production Model

Toolbox drawer(s):

  • Ecosystem
  • Fish and Fisheries

Keywords:

  • Surplus Production Model
  • Multispecies Model
  • Guided User Interface
MSVPA_X2
Multi-Species Virtual Population Analysis eXtended 2

Toolbox drawer(s):

  • Ecosystem
  • Fish and Fisheries

Keywords:

  • Multispecies Model
  • Virtual Population Analysis
  • Guided User Interface
nmfSharedUtilities
nmfSharedUtilities

Toolbox drawer(s):

  • Ecosystem
  • Fish and Fisheries

Keywords:

  • User Utilities
  • Guided User Interface
  • Multispecies Model
nmfspalette
nmfspalette

Toolbox drawer(s):

  • Utility Tools

Keywords:

  • User Utilities
  • Developer Utilities
  • NOAA Branding
  • R Package
NWCTrends
Standardized trends metrics for listed PNW salmonids

Toolbox drawer(s):

  • Protected Species
  • Fish and Fisheries

Keywords:

  • Salmon
  • Time Series
  • R Package
  • Standardized Reporting
ObsCovgTools
Observer Coverage Simulator Tool

Toolbox drawer(s):

  • Protected Species
  • Fish and Fisheries

Keywords:

  • Bycatch
  • R Package
  • Shiny
  • Guided User Interface
OSMOSE
Object-oriented Simulator of Marine Ecosystems

Toolbox drawer(s):

  • Ecosystem
  • Fish and Fisheries

Keywords:

  • Simulation
  • Individual Based Model
  • Spatial Model
phenomix
phenomix

Toolbox drawer(s):

  • Protected Species
  • Fish and Fisheries

Keywords:

  • Salmon
  • Time Series
  • Fish and Fisheries
phylosem
R package for phylogenetic structural equation models

Toolbox drawer(s):

  • Fish and Fisheries
  • General Modeling Tools

Keywords:

  • Natural Mortality Model
  • R Package
  • TMB
POPSIM
Population Simulator

Toolbox drawer(s):

  • Fish and Fisheries

Keywords:

  • Simulation
  • Guided User Interface
POPSIM-A
Age Population Simulator

Toolbox drawer(s):

  • Fish and Fisheries

Keywords:

  • Simulation
  • Guided User Interface
POPSIM-L
Length Population Simulator

Toolbox drawer(s):

  • Fish and Fisheries

Keywords:

  • Simulation
  • Guided User Interface
PSA
Productivity and Susceptibility Analysis (Shiny Version)

Toolbox drawer(s):

  • Fish and Fisheries
  • Human Dimensions

Keywords:

  • Risk Assessment Tool
  • Shiny
  • Web App
  • Decision Support Tool
  • Data Limited Method
PSA_nft
Productivity and Susceptibility Analysis (National Fisheries Toolbox)

Toolbox drawer(s):

  • Fish and Fisheries

Keywords:

  • Risk Assessment Tool
  • Fish and Fisheries
  • Simulation
pycax
pycax: Python client for the Coordinated Assessment Program CAX database REST API

Toolbox drawer(s):

  • Fish and Fisheries
  • Protected Species

Keywords:

  • Salmon
  • API Client
  • Python Package
  • West Coast
r4MAS
R interface to Metapopulation Assessment System

Toolbox drawer(s):

  • Fish and Fisheries

Keywords:

  • Stock Assessment Model
  • R Package
r4ss
r4ss

Toolbox drawer(s):

  • Fish and Fisheries

Keywords:

  • Data Visualization
  • Fisheries
  • Output Visualization
  • R Package
rCAX
rCAX: R client for the Coordinated Assessment HLI API

Toolbox drawer(s):

  • Protected Species
  • Fish and Fisheries

Keywords:

  • R Package
  • Salmon
  • API Client
  • West Coast
REIA
Regional Economic Impact Analysis for North Pacific Fisheries

Toolbox drawer(s):

  • Human Dimensions
  • Fish and Fisheries

Keywords:

  • Economics
  • North Pacific
  • Fish and Fisheries
REMORA
REsource Management Option Review and Analysis Tool

Toolbox drawer(s):

  • Ecosystem

Keywords:

  • Guided User Interface
  • Decision Support Tool
  • Projection Modeling
RIVARD
Rivard Calculator

Toolbox drawer(s):

  • Fish and Fisheries

Keywords:

  • Calculator
  • User Utilities
  • Guided User Interface
RPATH
R implementation of the Ecopath with Ecosim

Toolbox drawer(s):

  • Ecosystem
  • Fish and Fisheries

Keywords:

  • R Package
  • Multispecies Model
  • Ecosystem
  • Fish and Fisheries
  • Management Strategy Evaluation
SCALE
Statistical Catch at Length Model

Toolbox drawer(s):

  • Fish and Fisheries

Keywords:

  • Stock Assessment Model
  • Length Structured Model
  • ADMB
  • Guided User Interface
SEINE
Survival Estimation in Non-Equilibrium situations

Toolbox drawer(s):

  • Fish and Fisheries

Keywords:

  • Data Limited Method
  • Stock Assessment Model
  • Guided User Interface
  • Natural Mortality Model
SIFC
Social Indicators for Fishing Communities

Toolbox drawer(s):

  • Human Dimensions

Keywords:

  • Web App
  • Data Exploration
  • Socioeconomics
SRFIT
Stock Recruitment Fitting Model

Toolbox drawer(s):

  • Fish and Fisheries

Keywords:

  • Reference Points Model
  • ADMB
  • Bayesian Modeling
  • Guided User Interface
SS-DL_Tool
Stock Synthesis - Data Limited Tool

Toolbox drawer(s):

  • Fish and Fisheries

Keywords:

  • Data Limited Method
  • Shiny
  • Web App
  • Guided User Interface
  • Stock Assessment Model
SS3
Stock Synthesis

Toolbox drawer(s):

  • Fish and Fisheries

Keywords:

  • Stock Assessment Model
  • Age Structured Model
  • Length Structured Model
  • ADMB
  • Guided User Interface
SSMSE
Management Strategy Evaluation for SS3

Toolbox drawer(s):

  • Fish and Fisheries

Keywords:

  • R Package
  • Management Strategy Evaluation
  • ADMB
  • Risk Assessment Tool
  • Decision Support Tool
STATCAM
Statistical Catch at Age Model

Toolbox drawer(s):

  • Fish and Fisheries

Keywords:

  • Age Structured Model
  • ADMB
  • Guided User Interface
StockSMART
Stock Status, Management, Assessments & Resource Trends

Toolbox drawer(s):

  • Fish and Fisheries

Keywords:

  • Web App
  • Data Visualization
TPW
Top Predator Watch

Toolbox drawer(s):

  • Ecosystems
  • Protected Species

Keywords:

  • Bycatch
  • Fisheries
  • Marine Mammals
  • North Pacific
  • Species Distribution Model
VAST
Vector Autoregressive Spatio-Temporal Model

Toolbox drawer(s):

  • General Modeling Tools
  • Fish and Fisheries

Keywords:

  • Time Series
  • Spatial Model
  • TMB
  • Species Distribution Model
VES-V
Virtual Ecosystem Scenario Viewer

Toolbox drawer(s):

  • Ecosystem
  • Fish and Fisheries

Keywords:

  • Guided User Interface
  • Visualization
  • Simulation
  • Fish and Fisheries
VPA
Virtual Population Analysis

Toolbox drawer(s):

  • Fish and Fisheries

Keywords:

  • Virtual Population Analysis
  • Stock Assessment Model
  • Guided User Interface
VRAP
Viability and Risk Assessment Procedure

Toolbox drawer(s):

  • Protected Species
  • Fish and Fisheries

Keywords:

  • Risk Assessment Tool
  • Simulation
  • Fish and Fisheries
  • Shiny
  • Web App
VRD
Visual Report Designer

Toolbox drawer(s):

  • Fish and Fisheries

Keywords:

  • Guided User Interface
  • User Utilities
WHAM
Woods Hole Assessment Model

Toolbox drawer(s):

  • Fish and Fisheries

Keywords:

  • Stock Assessment Model
  • Age Structured Model
  • TMB
  • R Package
  • Management Strategy Evaluation
WW2.0
WhaleWatch 2.0

Toolbox drawer(s):

  • Ecosystems
  • Protected Species

Keywords:

  • Decision Support Tool
  • Marine Mammals
  • North Pacific
  • Shiny
  • Species Distribution Model
YPR
Yield Per Recruit

Toolbox drawer(s):

  • Fish and Fisheries

Keywords:

  • Reference Points Model
  • Stock Assessment Tool
  • Visualization
YPRLEN
Length Based Yield Per Recruit

Toolbox drawer(s):

  • Fish and Fisheries

Keywords:

  • Reference Points Model
  • Stock Assessment Tool
  • Visualization
  • Length Structured Model
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