Authors

Christine Stawitz, Andrea Havron, Matthew Supernaw, Bai Li, Kathryn Doering

Contributors

Nathan Vaughan, Megumi Oshima, Ian Taylor, Kyle Shertzer, Kelli Johnson, Cole Monnahan, Chris Legault, Kristan Blackhart, Patrick Lynch, Rick Methot, Tim Miller, Huihua Lee, EJ Dick, Peter Kuriyama, Jon Brodziak

Description

The NOAA Fisheries Integrated Modeling System is a software system designed and architected to support next-generation fisheries stock assessment, ecosystem, and socioeconomic modeling. A team of experts within NOAA Fisheries is designing and developing the system, and we are advised by the FIMS Council which includes academic, industry, and international partners. We have an operational software system that was released to the public in 2023 and is ready for beta testing, although it is still under active development. Users and developers are welcome to submit feedback using Github issues.

Installation Instructions

The following software is required:

• R version 4.0.0 or newer (or RStudio version 1.2.5042 or newer)
• the remotes R package
• TMB version 1.8.0 or newer (install instructions are here.)
• Rtools4 (required for Windows users only; available from here)

Install using:

remotes::install_github("NOAA-FIMS/FIMS")
library(FIMS)

Citation

Christine Stawitz - NOAA, Andrea-Havron-NOAA, Bai Li - NOAA, Matthew-Supernaw-NOAA, Kathryn Doering, Nathan Vaughan, Kelli Johnson, Jane Sullivan, Jon Kenton Tarsus Brodziak, Ian Taylor, Meg Oshima, Jim Ianelli, Tim Miller, peterkuriyama-NOAA, & KyleShertzer-NOAA. (2023). NOAA-FIMS/FIMS: v0.2.0 (Version v0.2.0) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.10393209

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Keywords

• Age Structured Model
• C++
• R Package
• Stock Assessment Model
• TMB

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