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NOAA Resources

NOAA Themed pkgdown

Create a NOAA themed pkgdown Landing Page in 3 steps

Resources for working with sensitive information

Helpful links for working with secrets and confidential data

NOAA Fisheries Integrated Toolbox Calendar

See NOAA FIT community events

Posit Connect

NOAA OST Posit Connect Instance

NOAA GitHub Guidelines

Guidelines for using GitHub at NOAA Fisheries

NOAA FIT Code of Conduct

Learn about the NOAA FIT Code of Conduct

NOAA Stock Assessment Calendar

Calendar of events related to Fisheries stock assessment

NOAA Science Seminar Series

Calendar of public seminars available across NOAA

NMFS R User Group

Information on the NOAA Fisheries-wide R user group

FY18-20 National Protected Species Toolbox Initiative Talks

Recordings and talks on tools funded by the FY18-20 NPSTI

Marine Recreational Information Program User Seminars

Links to past Seminars and information for MRIP users

National Protected Species Toolbox Initiative Publications

Publications resulting from the NPSTI

2018 National Protected Species Toolbox Initiative Mini Symposium

Links to presentations from the 2018 NPSTI mini-symposium

2015 National Protected Species Toolbox Initiative Mini Symposium

See presentations from the 2015 NPSTI mini-symposium

National Protected Species Toolbox Initiative

Developing analytical tools for protected species

Stock Assessment Workshops and Trainings

Information about trainings for NOAA Fisheries stock assessment scientists

General Stock Assessment Information

Introduction to fisheries and marine mammal stock assessments

NOAA Library Stock Assessment Science Seminar Series

Cloud Resources

Introduction to cloud computing for scientific computing

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Developer Resources

Version Control

Overview and guidance for using version control systems, such as Git.

NOAA FIT Technical Meeting Resources (2020-2021)

View content from the NOAA FIT Tech Meetings that occurred during 2020 and 2021

Tips for Commenting Code

Learn how to comment concisely

Object-oriented programming in R

Learn about what object-oriented programming systems are and how they are implemented in R

Reproducible Code

Writing and using reproducible code

Dependency Management

How to declare and manage software dependencies, and maintain backwards compatibility where appropriate

Code Testing

Guidance on how to test your code

Code Review

Introduction to code review and how to do it

Code Documentation

How to document code and datasets well

GitHub Best Practices

Guidance for writing code collaboratively on GitHub

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NOAA FIT

The FIT R Universe

Access up-to-date compiled R packages from the NOAA Fisheries Integrated Toolbox

FIT Tool Quality Standards

Learn more about the FIT tool quality standards

FIT Tool Quality Standards: Information for Reviewers

Information for Reviewers of the FIT tool quality standards

FIT Tool Quality Standards: Reviewer Checklists

Checklists for reviewers for the FIT tool quality standards

Tool Onboarding Procedures

How to get your software listed on the FIT

Shared media about the FIT

Media resources to share about the FIT

Tutorials and Vignettes, FIT General Modeling Tools

See tutorials for bayesdfa, nmfspalette, and more

Contact

Ask a question or provide feedback to the NOAA FIT team

Contributing to the FIT

How to Contribute to the NOAA Fisheries Integrated Toolbox

Tutorials and Vignettes

Self-guided resources for using NOAA FIT tools

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Tutorials

Learn TMB (Beginner and Intermediate)

Learn how to use Template Model Builder (Beginner and Intermediate)

Developing R Packages Tutorial

Learn how to develop R packages in this self-guided tutorial

Posit Webinar Series FY2023

Get links to materials for the Posit Webinar Series hosted by NSAP

Reproducible Reporting with R (R3)

Materials from training for marine ecological indicators

Practical R Workflow Workshop for NOAA Fisheries Scientists

Self-guided resources to learn about using R in a reproducible way

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Git and GitHub Resources

Codespaces

Resources for using GitHub Codespaces

Introduction to GitHub

Learn more about how to get started using GitHub

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Software User Resources

FRDC Stock Assessment Toolbox

Stock Assessment Software options compiled by Australia’s Fisheries Research and Development Corporation

ROpenSci

Learn more about an organization hosting Open Source R packages that support Open Science