Posts by Tag

developer resources

The FIT R Universe

Access up-to-date compiled R packages from the NOAA Fisheries Integrated Toolbox

NOAA Themed pkgdown

Create a NOAA themed pkgdown Landing Page in 3 steps

FIT Tool Quality Standards

Learn more about the FIT tool quality standards

FIT Tool Quality Standards: Information for Reviewers

Information for Reviewers of the FIT tool quality standards

FIT Tool Quality Standards: Reviewer Checklists

Checklists for reviewers for the FIT tool quality standards

Resources for working with sensitive information

Helpful links for working with secrets and confidential data

Posit Connect

NOAA OST Posit Connect Instance

NOAA GitHub Guidelines

Guidelines for using GitHub at NOAA Fisheries

Version Control

Overview and guidance for using version control systems, such as Git.

Tool Onboarding Procedures

How to get your software listed on the FIT

Open Sciency

Check out a core open science curriculum by and for the research community

Open Science at NOAA Fisheries

Learn more about Open Science at NOAA Fisheries

NOAA FIT Technical Meeting Resources (2020-2021)

View content from the NOAA FIT Tech Meetings that occurred during 2020 and 2021

Shared media about the FIT

Media resources to share about the FIT

Learn TMB (Beginner and Intermediate)

Learn how to use Template Model Builder (Beginner and Intermediate)

Developing R Packages Tutorial

Learn how to develop R packages in this self-guided tutorial

Tips for Commenting Code

Learn how to comment concisely

Posit Webinar Series FY2023

Get links to materials for the Posit Webinar Series hosted by NSAP

NOAA FIT Code of Conduct

Learn about the NOAA FIT Code of Conduct

Codespaces

Resources for using GitHub Codespaces

ROpenSci

Learn more about an organization hosting Open Source R packages that support Open Science

NMFS R User Group

Information on the NOAA Fisheries-wide R user group

Introduction to GitHub

Learn more about how to get started using GitHub

Practical R Workflow Workshop for NOAA Fisheries Scientists

Self-guided resources to learn about using R in a reproducible way

Contributing to the FIT

How to Contribute to the NOAA Fisheries Integrated Toolbox

Object-oriented programming in R

Learn about what object-oriented programming systems are and how they are implemented in R

Reproducible Code

Writing and using reproducible code

Dependency Management

How to declare and manage software dependencies, and maintain backwards compatibility where appropriate

Code Testing

Guidance on how to test your code

Code Review

Introduction to code review and how to do it

Code Documentation

How to document code and datasets well

GitHub Best Practices

Guidance for writing code collaboratively on GitHub

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NOAA resources

NOAA Themed pkgdown

Create a NOAA themed pkgdown Landing Page in 3 steps

FIT Tool Quality Standards

Learn more about the FIT tool quality standards

FIT Tool Quality Standards: Information for Reviewers

Information for Reviewers of the FIT tool quality standards

FIT Tool Quality Standards: Reviewer Checklists

Checklists for reviewers for the FIT tool quality standards

Posit Connect

NOAA OST Posit Connect Instance

NOAA GitHub Guidelines

Guidelines for using GitHub at NOAA Fisheries

Open Science at NOAA Fisheries

Learn more about Open Science at NOAA Fisheries

NOAA FIT Technical Meeting Resources (2020-2021)

View content from the NOAA FIT Tech Meetings that occurred during 2020 and 2021

Shared media about the FIT

Media resources to share about the FIT

NOAA FIT Code of Conduct

Learn about the NOAA FIT Code of Conduct

NOAA Stock Assessment Calendar

Calendar of events related to Fisheries stock assessment

NOAA Science Seminar Series

Calendar of public seminars available across NOAA

NMFS R User Group

Information on the NOAA Fisheries-wide R user group

FY18-20 National Protected Species Toolbox Initiative Talks

Recordings and talks on tools funded by the FY18-20 NPSTI

Marine Recreational Information Program User Seminars

Links to past Seminars and information for MRIP users

National Protected Species Toolbox Initiative Publications

Publications resulting from the NPSTI

2018 National Protected Species Toolbox Initiative Mini Symposium

Links to presentations from the 2018 NPSTI mini-symposium

2015 National Protected Species Toolbox Initiative Mini Symposium

See presentations from the 2015 NPSTI mini-symposium

National Protected Species Toolbox Initiative

Developing analytical tools for protected species

Stock Assessment Workshops and Trainings

Information about trainings for NOAA Fisheries stock assessment scientists

NOAA Library Stock Assessment Science Seminar Series

Back to Top ↑

R

The FIT R Universe

Access up-to-date compiled R packages from the NOAA Fisheries Integrated Toolbox

Posit Connect

NOAA OST Posit Connect Instance

NOAA FIT Technical Meeting Resources (2020-2021)

View content from the NOAA FIT Tech Meetings that occurred during 2020 and 2021

Learn TMB (Beginner and Intermediate)

Learn how to use Template Model Builder (Beginner and Intermediate)

Developing R Packages Tutorial

Learn how to develop R packages in this self-guided tutorial

Tips for Commenting Code

Learn how to comment concisely

Posit Webinar Series FY2023

Get links to materials for the Posit Webinar Series hosted by NSAP

Codespaces

Resources for using GitHub Codespaces

ROpenSci

Learn more about an organization hosting Open Source R packages that support Open Science

NMFS R User Group

Information on the NOAA Fisheries-wide R user group

Reproducible Reporting with R (R3)

Materials from training for marine ecological indicators

Introduction to GitHub

Learn more about how to get started using GitHub

Practical R Workflow Workshop for NOAA Fisheries Scientists

Self-guided resources to learn about using R in a reproducible way

Contributing to the FIT

How to Contribute to the NOAA Fisheries Integrated Toolbox

Object-oriented programming in R

Learn about what object-oriented programming systems are and how they are implemented in R

Reproducible Code

Writing and using reproducible code

Dependency Management

How to declare and manage software dependencies, and maintain backwards compatibility where appropriate

Code Testing

Guidance on how to test your code

Back to Top ↑

software user resources

The FIT R Universe

Access up-to-date compiled R packages from the NOAA Fisheries Integrated Toolbox

Resources for working with sensitive information

Helpful links for working with secrets and confidential data

Open Sciency

Check out a core open science curriculum by and for the research community

Open Science at NOAA Fisheries

Learn more about Open Science at NOAA Fisheries

NOAA FIT Technical Meeting Resources (2020-2021)

View content from the NOAA FIT Tech Meetings that occurred during 2020 and 2021

FRDC Stock Assessment Toolbox

Stock Assessment Software options compiled by Australia’s Fisheries Research and Development Corporation

Shared media about the FIT

Media resources to share about the FIT

Learn TMB (Beginner and Intermediate)

Learn how to use Template Model Builder (Beginner and Intermediate)

NOAA FIT Code of Conduct

Learn about the NOAA FIT Code of Conduct

Codespaces

Resources for using GitHub Codespaces

ROpenSci

Learn more about an organization hosting Open Source R packages that support Open Science

NMFS R User Group

Information on the NOAA Fisheries-wide R user group

Tutorials and Vignettes, FIT General Modeling Tools

See tutorials for bayesdfa, nmfspalette, and more

Practical R Workflow Workshop for NOAA Fisheries Scientists

Self-guided resources to learn about using R in a reproducible way

Tutorials and Vignettes

Self-guided resources for using NOAA FIT tools

Cloud Resources

Introduction to cloud computing for scientific computing

Reproducible Code

Writing and using reproducible code

Back to Top ↑

software

The FIT R Universe

Access up-to-date compiled R packages from the NOAA Fisheries Integrated Toolbox

NOAA Themed pkgdown

Create a NOAA themed pkgdown Landing Page in 3 steps

FIT Tool Quality Standards

Learn more about the FIT tool quality standards

FIT Tool Quality Standards: Information for Reviewers

Information for Reviewers of the FIT tool quality standards

FIT Tool Quality Standards: Reviewer Checklists

Checklists for reviewers for the FIT tool quality standards

Version Control

Overview and guidance for using version control systems, such as Git.

ROpenSci

Learn more about an organization hosting Open Source R packages that support Open Science

Contributing to the FIT

How to Contribute to the NOAA Fisheries Integrated Toolbox

Object-oriented programming in R

Learn about what object-oriented programming systems are and how they are implemented in R

Reproducible Code

Writing and using reproducible code

Dependency Management

How to declare and manage software dependencies, and maintain backwards compatibility where appropriate

Code Testing

Guidance on how to test your code

Code Review

Introduction to code review and how to do it

GitHub Best Practices

Guidance for writing code collaboratively on GitHub

Back to Top ↑

GitHub

NOAA Themed pkgdown

Create a NOAA themed pkgdown Landing Page in 3 steps

FIT Tool Quality Standards

Learn more about the FIT tool quality standards

FIT Tool Quality Standards: Information for Reviewers

Information for Reviewers of the FIT tool quality standards

FIT Tool Quality Standards: Reviewer Checklists

Checklists for reviewers for the FIT tool quality standards

Resources for working with sensitive information

Helpful links for working with secrets and confidential data

NOAA GitHub Guidelines

Guidelines for using GitHub at NOAA Fisheries

Version Control

Overview and guidance for using version control systems, such as Git.

Codespaces

Resources for using GitHub Codespaces

Reproducible Reporting with R (R3)

Materials from training for marine ecological indicators

Introduction to GitHub

Learn more about how to get started using GitHub

Practical R Workflow Workshop for NOAA Fisheries Scientists

Self-guided resources to learn about using R in a reproducible way

GitHub Best Practices

Guidance for writing code collaboratively on GitHub

Back to Top ↑

tutorials

Open Sciency

Check out a core open science curriculum by and for the research community

Learn TMB (Beginner and Intermediate)

Learn how to use Template Model Builder (Beginner and Intermediate)

Developing R Packages Tutorial

Learn how to develop R packages in this self-guided tutorial

Posit Webinar Series FY2023

Get links to materials for the Posit Webinar Series hosted by NSAP

NOAA Stock Assessment Calendar

Calendar of events related to Fisheries stock assessment

Marine Recreational Information Program User Seminars

Links to past Seminars and information for MRIP users

Reproducible Reporting with R (R3)

Materials from training for marine ecological indicators

Tutorials and Vignettes, FIT General Modeling Tools

See tutorials for bayesdfa, nmfspalette, and more

Practical R Workflow Workshop for NOAA Fisheries Scientists

Self-guided resources to learn about using R in a reproducible way

Stock Assessment Workshops and Trainings

Information about trainings for NOAA Fisheries stock assessment scientists

Tutorials and Vignettes

Self-guided resources for using NOAA FIT tools

Back to Top ↑

seminars

NOAA Stock Assessment Calendar

Calendar of events related to Fisheries stock assessment

NOAA Science Seminar Series

Calendar of public seminars available across NOAA

FY18-20 National Protected Species Toolbox Initiative Talks

Recordings and talks on tools funded by the FY18-20 NPSTI

Marine Recreational Information Program User Seminars

Links to past Seminars and information for MRIP users

2018 National Protected Species Toolbox Initiative Mini Symposium

Links to presentations from the 2018 NPSTI mini-symposium

2015 National Protected Species Toolbox Initiative Mini Symposium

See presentations from the 2015 NPSTI mini-symposium

NOAA Library Stock Assessment Science Seminar Series

Back to Top ↑

git

Resources for working with sensitive information

Helpful links for working with secrets and confidential data

NOAA GitHub Guidelines

Guidelines for using GitHub at NOAA Fisheries

Version Control

Overview and guidance for using version control systems, such as Git.

Codespaces

Resources for using GitHub Codespaces

Introduction to GitHub

Learn more about how to get started using GitHub

GitHub Best Practices

Guidance for writing code collaboratively on GitHub

Back to Top ↑

protected species drawer

FY18-20 National Protected Species Toolbox Initiative Talks

Recordings and talks on tools funded by the FY18-20 NPSTI

National Protected Species Toolbox Initiative Publications

Publications resulting from the NPSTI

2018 National Protected Species Toolbox Initiative Mini Symposium

Links to presentations from the 2018 NPSTI mini-symposium

2015 National Protected Species Toolbox Initiative Mini Symposium

See presentations from the 2015 NPSTI mini-symposium

National Protected Species Toolbox Initiative

Developing analytical tools for protected species

General Stock Assessment Information

Introduction to fisheries and marine mammal stock assessments

Back to Top ↑

fish and fisheries drawer

FRDC Stock Assessment Toolbox

Stock Assessment Software options compiled by Australia’s Fisheries Research and Development Corporation

Learn TMB (Beginner and Intermediate)

Learn how to use Template Model Builder (Beginner and Intermediate)

Stock Assessment Workshops and Trainings

Information about trainings for NOAA Fisheries stock assessment scientists

General Stock Assessment Information

Introduction to fisheries and marine mammal stock assessments

Tutorials and Vignettes

Self-guided resources for using NOAA FIT tools

Back to Top ↑

code review

FIT Tool Quality Standards

Learn more about the FIT tool quality standards

FIT Tool Quality Standards: Information for Reviewers

Information for Reviewers of the FIT tool quality standards

FIT Tool Quality Standards: Reviewer Checklists

Checklists for reviewers for the FIT tool quality standards

Code Review

Introduction to code review and how to do it

Back to Top ↑

contact

Shared media about the FIT

Media resources to share about the FIT

Contact

Ask a question or provide feedback to the NOAA FIT team

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general modeling drawer

Learn TMB (Beginner and Intermediate)

Learn how to use Template Model Builder (Beginner and Intermediate)

Tutorials and Vignettes, FIT General Modeling Tools

See tutorials for bayesdfa, nmfspalette, and more

Back to Top ↑

onboarding

Tool Onboarding Procedures

How to get your software listed on the FIT

NOAA FIT Code of Conduct

Learn about the NOAA FIT Code of Conduct

Back to Top ↑

open science

Open Sciency

Check out a core open science curriculum by and for the research community

Open Science at NOAA Fisheries

Learn more about Open Science at NOAA Fisheries

Back to Top ↑

backwards compatibility

Dependency Management

How to declare and manage software dependencies, and maintain backwards compatibility where appropriate

Back to Top ↑

Posit

Posit Webinar Series FY2023

Get links to materials for the Posit Webinar Series hosted by NSAP

Back to Top ↑

ecosystem drawer

NOAA FIT Technical Meeting Resources (2020-2021)

View content from the NOAA FIT Tech Meetings that occurred during 2020 and 2021

Back to Top ↑